CSE 590C, Autumn 2019: Reading and Research in Computational Biology

Course information

CSE 590C is a weekly seminar on Readings and Research in Computational Biology, open to all graduate students in computational, biological, and mathematical sciences.

Schedule

Date Presenters Faculty mentor Paper
Sep 30 Organizational meeting
Oct 7 Gabe Erion Yuliang Wang "SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data"
Oct 14 Fanny Huang Bill Noble "A supervised learning framework for chromatin loop detection in genome-wide contact maps"
Oct 21 Max Gray, Joe Janizek Su-In Lee "Autoencoder and optimal transport to infer single-cell trajectories of biological processes"
Oct 28 Class cancelled due to illness
Nov 4 Johannes Linder, Ethan Bill Noble "Data denoising with transfer learning in single-cell transcriptomics"
Nov 11 No school — Veterans Day
Nov 18 Kathleen Abadie Yuliang Wang "High-definition spatial transcriptomics for in situ tissue profiling"
Nov 25 Alanna Gary, Alyssa LaFleur John Mittler "HIV control strategies for sex worker-client contact networks"
"Universal voluntary HIV testing with immediate antiretroviral therapy as a strategy for elimination of HIV transmission: a mathematical model"
Dec 2 Jacob Schreiber Bill Noble "Cross-species regulatory sequence activity prediction"

Note on electronic access to journals: The UW Library is generally a paid subscriber to non-open-access journals we cite. You can freely access these articles from on-campus computers. For off-campus access, look at the library "proxy server" instructions. You will be prompted for your UW net ID and password.

Mailing lists

cse590cb@cs.washington.edu Course-related announcements and discussions
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compbio-seminars@cs.washington.edu Biology seminar announcements from all around campus
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compbio-group@cs.washington.edu Computational biology discussions, conference/job postings, etc.,
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