Kernel methods for predicting protein-protein interactions

Asa Ben-Hur and William Stafford Noble

ISMB 2005

Datasets:

Sequence kernels (some of these files are big: >200MB): Sample code:

Note -- the code is not meant to run as is -- it represents examples of PyML usage that you will need to modify to reflect the way your system is set up. You will need to install PyML.