METHOD MEAN 7.3.5.2 2.56.1.2 3.1.8.1 3.1.8.3 1.27.1.1 1.27.1.2 3.42.1.1 1.45.1.2 1.4.1.1 2.9.1.2 1.4.1.2 2.9.1.3 1.4.1.3 2.44.1.2 2.9.1.4 3.42.1.5 3.2.1.2 3.42.1.8 3.2.1.3 3.2.1.4 3.2.1.5 3.2.1.6 2.28.1.1 3.3.1.2 3.2.1.7 2.28.1.3 3.3.1.5 7.3.10.1 3.32.1.11 3.32.1.13 7.3.6.1 7.3.6.2 7.3.6.4 2.38.4.1 2.1.1.1 2.1.1.2 3.32.1.1 2.38.4.3 2.1.1.3 2.1.1.4 2.38.4.5 2.1.1.5 7.39.1.2 2.52.1.2 7.39.1.3 1.36.1.2 3.32.1.8 1.36.1.5 7.41.5.1 7.41.5.2 1.41.1.2 2.5.1.1 2.5.1.3 1.41.1.5 spectrum_kernel 0.4164 0.8000 0.1200 0.6543 0.5825 0.2833 0.4057 0.3175 0.7100 0.3094 0.1138 0.4000 0.8680 0.0800 0.6200 0.2044 0.0000 0.1640 0.2920 0.3967 0.4257 0.6114 0.5100 0.1800 0.0000 0.9050 0.2400 0.1450 0.4729 0.8267 0.4600 0.9622 0.5652 0.9680 0.0000 0.4824 0.7987 0.5800 0.0880 0.8775 0.4686 0.1625 0.2815 0.4829 0.2400 0.5178 0.2867 0.5760 0.0000 0.1343 0.2400 0.8700 0.0600 0.0886 0.6560 spectrum_kernel+homologs[blast] 0.5015 0.8000 0.1475 0.8943 0.6325 0.2467 0.4943 0.7500 0.7100 0.2471 0.2077 0.4360 0.9240 0.0067 0.7933 0.5222 0.0000 0.3253 0.3080 0.4600 0.6914 0.7829 0.3700 0.2667 0.0000 0.9600 0.3160 0.2100 0.4729 0.8533 0.4920 0.9889 0.6000 0.9640 0.4600 0.8432 0.8925 0.7425 0.0000 0.8925 0.5064 0.1150 0.2623 0.4543 0.1920 0.4756 0.3567 0.5600 0.0000 0.1343 0.1800 0.9967 0.7244 0.4343 0.9827 spectrum_kernel+homologs[psiblast] 0.5448 0.8000 0.1625 0.9629 0.6950 0.2467 0.4400 0.7500 0.4800 0.2471 0.2077 0.4400 0.9240 0.6733 1.0000 0.7000 0.0000 0.4680 0.3760 0.4733 0.7286 0.9171 0.4550 0.2733 0.0000 0.9600 0.3240 0.4963 0.4729 0.9267 0.4520 0.9911 0.6000 0.9640 0.4200 0.9072 0.9750 0.6275 0.0000 0.8850 0.5893 0.1100 0.2385 0.4543 0.1920 0.6378 0.3567 0.5680 0.0000 0.1343 0.2600 0.9967 0.8311 0.6343 0.9933 spectrum_kernel+profile[blast] 0.6392 0.8556 0.9750 1.0000 0.8375 0.4300 0.4571 1.0000 0.3900 0.8988 0.3385 0.3120 0.8880 0.6600 1.0000 0.7867 0.0000 0.0000 0.5960 0.6267 0.6886 1.0000 0.3300 0.9400 0.0000 0.9350 0.0000 0.2500 0.5386 0.8867 0.9160 1.0000 1.0000 1.0000 0.9000 0.8744 0.9025 0.2150 0.0000 0.9500 0.8129 0.3700 0.1700 0.8600 0.2000 0.9556 0.5900 0.8220 0.0000 0.4143 0.5600 1.0000 0.6667 0.7171 1.0000 spectrum_kernel+profile[psiblast] 0.6991 0.8600 0.9600 1.0000 0.9375 0.4400 0.4143 1.0000 0.4100 0.8659 0.3615 0.3120 0.8680 1.0000 1.0000 0.8244 0.0000 1.0000 0.4720 0.4900 1.0000 0.9914 0.5100 0.9000 0.9400 0.9900 0.0000 0.8562 0.5521 0.9800 0.7080 1.0000 1.0000 1.0000 0.9400 0.7856 0.8750 0.6325 0.0000 0.1375 0.7557 0.4650 0.0631 0.9000 0.1840 0.9289 0.5267 0.9600 0.0000 0.3971 0.7000 1.0000 1.0000 0.8571 1.0000 spectrum_kernel+testset_homologs[psiblast] 0.6255 0.8000 0.1475 0.7743 0.6600 0.2467 0.4943 0.8150 0.7100 0.2471 0.2077 0.4400 1.0000 0.9533 1.0000 0.7311 0.0000 0.7613 0.3280 0.6033 1.0000 0.9771 0.9900 0.2667 0.9800 0.9700 0.3120 0.6813 0.4729 0.9267 0.9200 1.0000 0.5991 0.9680 0.4200 0.9224 0.9738 0.8300 0.0000 0.9500 0.8314 0.1525 0.2162 0.4543 0.2000 0.4756 0.6667 0.6720 0.0000 0.1343 0.2600 1.0000 0.7756 0.8571 1.0000 spectrum_kernel+rndwlk2+homologs[psiblast] 0.4952 0.8044 0.1650 0.8743 0.4425 0.3767 0.4086 0.7775 0.5100 0.2071 0.2123 0.5480 0.9200 0.4200 1.0000 0.6533 0.0000 0.4613 0.2600 0.3833 0.5429 0.7743 0.3400 0.2333 0.4600 0.9200 0.2720 0.2462 0.4743 0.7467 0.4560 0.9844 0.6400 0.9800 0.4200 0.7800 0.8812 0.3600 0.0000 0.6350 0.3036 0.1175 0.1931 0.4343 0.1800 0.5956 0.3700 0.1280 0.0000 0.1686 0.3700 0.9600 0.8044 0.5457 1.0000 spectrum_kernel+rndwlk3+homologs[psiblast] 0.3280 0.3822 0.0000 0.5171 0.0000 0.2667 0.0914 0.7400 0.4500 0.1576 0.0000 0.5000 0.7280 0.0000 0.9933 0.4378 0.0000 0.3480 0.2000 0.2000 0.2114 0.3857 0.2650 0.2067 0.5800 0.7450 0.0640 0.1862 0.1700 0.5333 0.4000 0.9156 0.0861 0.6480 0.3500 0.6184 0.6238 0.1275 0.0000 0.0550 0.1000 0.1000 0.0000 0.2057 0.1080 0.2222 0.1700 0.0220 0.2133 0.1114 0.1300 0.8433 0.7689 0.5343 1.0000 spectrum_kernel+trans-profile[psiblast] 0.7037 0.8978 1.0000 1.0000 0.9250 0.3967 0.4714 0.8750 0.4000 0.1047 0.3338 0.6040 0.9120 1.0000 1.0000 0.7778 0.0000 0.9720 0.5520 0.5833 0.9543 1.0000 0.7150 0.9000 0.0000 0.9850 0.8800 0.3125 0.6107 0.9267 0.6960 1.0000 0.8783 0.9920 0.8800 0.9560 0.9600 0.8225 0.0000 0.7125 0.8229 0.3725 0.0700 0.8600 0.1960 0.9511 0.5867 0.9700 0.0000 0.6000 0.7800 1.0000 0.9600 0.8457 1.0000 bag-kmeans[spec_psiblast_k=100]+testset_homologs[psiblast] 0.7187 0.6267 0.6850 0.9829 0.6650 0.1967 0.2600 0.9556 0.4100 0.9165 0.1631 0.4840 0.9640 1.0000 1.0000 0.8044 0.0000 0.9838 0.2600 0.7275 1.0000 1.0000 1.0000 0.4133 1.0000 0.9200 0.2120 0.8822 0.8457 0.9000 0.9633 1.0000 0.9409 0.9560 0.5000 0.8768 0.9988 0.8675 0.0800 1.0000 0.9221 0.1450 0.0731 0.7886 0.3560 0.8889 0.6667 0.9400 0.1733 0.7486 0.9300 1.0000 0.8778 0.8571 1.0000 bag-kmeans[spec_psiblast_k=400]+testset_homologs[psiblast] 0.6709 0.5222 0.0725 0.9371 0.5075 0.2000 0.3829 0.9711 0.2500 0.7929 0.0954 0.5240 0.9640 1.0000 1.0000 0.8267 0.0000 0.9448 0.3400 0.7175 1.0000 1.0000 1.0000 0.4667 1.0000 0.7950 0.4280 0.8711 0.8193 0.6667 0.8333 1.0000 0.5504 0.9920 0.0000 0.8992 0.9950 0.8725 0.0000 0.9900 0.9050 0.0350 0.3077 0.7143 0.2000 0.7267 0.6667 0.9820 0.0000 0.7686 0.9600 1.0000 0.8756 0.8571 1.0000 blast_kernel 0.3680 0.4667 0.0600 0.5657 0.3675 0.1100 0.0657 0.1375 0.4500 0.0071 0.0246 0.0000 0.2200 0.1467 0.6467 0.1689 0.0000 0.0920 0.2000 0.4767 0.7086 0.3257 0.6150 0.0000 0.0000 0.4850 0.0840 0.0000 0.2757 0.6267 0.2320 0.9667 0.4478 0.8080 0.4000 0.6968 0.6475 0.5700 0.2040 0.8200 0.7507 0.1000 0.2123 0.2029 0.1760 0.2067 0.3300 0.2220 0.3033 0.3200 0.8800 1.0000 0.5511 0.5200 0.9760 blast_kernel+homologs[blast] 0.4487 0.4667 0.1050 0.7543 0.6125 0.1533 0.1371 0.9250 0.4500 0.0188 0.1108 0.0880 0.6040 0.1867 0.6600 0.2133 0.0369 0.2027 0.3680 0.5700 0.8114 0.4029 0.7200 0.0000 0.0000 0.7250 0.1440 0.1150 0.2757 0.7467 0.2200 1.0000 0.4191 0.8640 0.5000 0.8608 0.8275 0.8050 0.1480 0.7375 0.8343 0.0600 0.1408 0.1629 0.1880 0.2356 0.3300 0.2880 0.2800 0.3200 0.9400 1.0000 0.8356 0.6286 1.0000 trans-svm[blast,on-trn+unlab]+homologs[blast] 0.4992 0.4778 0.0950 0.8371 0.5200 0.1867 0.0943 0.7650 0.0000 0.4435 0.1477 0.0640 0.5800 0.0000 1.0000 0.6978 0.0246 0.3533 0.4120 0.5100 0.6857 0.6629 0.2550 0.1600 0.0000 0.6200 0.1600 0.5813 0.2264 0.6667 0.6360 0.8489 0.3904 0.9280 0.5900 0.9288 0.8950 0.8675 0.3360 0.8175 0.8943 0.1675 0.1977 0.4400 0.0000 0.5933 0.3967 0.8840 0.0000 0.6086 0.8800 1.0000 0.8489 0.5829 1.0000 psiblast_kernel 0.5332 0.2644 0.3625 0.8514 0.5525 0.0567 0.1971 0.8750 0.0800 0.0000 0.0769 0.1400 0.7080 0.6333 1.0000 0.6244 0.0523 0.5813 0.4880 0.6533 0.8457 0.6829 0.6500 0.0200 0.5800 0.7400 0.2560 0.5850 0.3064 0.6667 0.3680 1.0000 0.4357 0.9280 0.2600 0.8792 0.9513 0.8475 0.2000 0.7750 0.9079 0.3025 0.1123 0.0000 0.2000 0.8400 0.3567 0.6360 0.0000 0.6629 0.8700 1.0000 0.8800 0.8486 1.0000 psiblast_kernel+homologs[psiblast] 0.5945 0.2644 0.3850 0.9914 0.6925 0.1200 0.2600 1.0000 0.0000 0.0024 0.1831 0.1160 0.8000 0.9933 1.0000 0.8533 0.0092 0.8973 0.3440 0.6533 0.8571 0.8400 0.6600 0.1933 0.9600 0.7500 0.4480 0.6925 0.3064 0.6667 0.5360 1.0000 0.4435 0.9560 0.4800 0.9152 0.9912 0.9800 0.0560 0.8875 0.9400 0.2300 0.0954 0.0000 0.2000 0.8622 0.3267 0.9220 0.0000 0.6629 0.8700 1.0000 0.9511 0.8571 1.0000 psiblast_kernel+testset_homologs[psiblast] 0.5845 0.1156 0.2850 0.7971 0.6675 0.1333 0.1229 0.9775 0.2700 0.0282 0.0123 0.0440 0.6840 1.0000 1.0000 0.7111 0.0077 0.9173 0.2680 0.7600 0.9943 0.9571 0.9800 0.0000 1.0000 0.7500 0.0440 0.7550 0.2121 0.9333 0.6320 1.0000 0.1965 0.9480 0.4700 0.8736 0.9300 0.9700 0.1560 0.9150 0.9086 0.0000 0.1400 0.0686 0.2000 0.8467 0.6667 0.9480 0.0000 0.6600 0.8600 1.0000 0.8889 0.8571 1.0000 psiblast_kernel+rndwlk2+homologs[psiblast] 0.6914 0.4156 0.7625 1.0000 0.7800 0.1267 0.1457 1.0000 0.0000 0.6424 0.2015 0.6200 0.8360 1.0000 1.0000 0.8756 0.9015 0.9680 0.4680 0.6500 0.9886 0.9771 0.4950 0.6333 0.9000 0.7500 0.4080 0.8638 0.9686 0.9933 0.5920 1.0000 0.8296 1.0000 0.0000 0.9136 0.9975 0.9450 0.0000 0.9550 0.9679 0.1075 0.1569 0.0686 0.1960 0.9800 0.4800 1.0000 0.0000 0.9800 0.9800 1.0000 0.9556 0.8571 1.0000 psiblast_kernel+rndwlk3+homologs[psiblast] 0.6461 0.8422 0.7875 1.0000 0.7550 0.0133 0.1857 0.9975 0.0000 0.0000 0.2092 0.5800 0.5520 1.0000 0.9867 0.8178 0.3169 0.9653 0.2800 0.6733 0.9714 0.9914 0.4850 0.7467 0.0000 0.8400 0.0960 0.8725 0.9900 0.9800 0.7000 1.0000 0.9417 1.0000 0.0000 0.8920 0.9925 0.8750 0.0000 0.8950 0.9457 0.2050 0.0546 0.0000 0.3200 0.9778 0.4267 1.0000 0.0000 0.9771 0.9900 1.0000 0.9178 0.8429 1.0000 psiblast_kernel+spectral[k=100]+testset_homologs[psiblast] 0.5714 0.3733 0.0250 0.9486 0.8525 0.0000 0.1229 0.9800 0.0000 0.0000 0.1615 0.1480 0.5520 0.9800 1.0000 0.6244 0.0000 0.9160 0.2000 0.6600 0.8571 0.8229 0.5000 0.2867 0.0000 0.8050 0.3280 0.7738 0.9214 0.9733 0.7440 1.0000 0.6678 1.0000 0.0000 0.8944 0.9975 0.9700 0.0000 0.8825 0.7721 0.1700 0.0231 0.0000 0.0000 0.9133 0.3333 0.9640 0.0000 1.0000 0.9800 0.9967 0.8800 0.8543 1.0000 psiblast_kernel+spectral[k=200]+testset_homologs[psiblast] 0.5811 0.3044 0.5225 1.0000 0.8100 0.1333 0.2343 1.0000 0.1500 0.0000 0.0554 0.1720 0.7480 0.9933 1.0000 0.7756 0.2862 0.9520 0.2440 0.7267 0.8571 0.9886 0.6950 0.0733 0.0000 0.6350 0.0160 0.6813 0.8771 0.9933 0.5480 1.0000 0.3626 1.0000 0.0000 0.8864 0.9738 0.9850 0.0000 0.5450 0.8414 0.0575 0.0577 0.0000 0.2600 0.9356 0.4500 0.8140 0.0000 1.0000 0.9700 1.0000 0.9089 0.8571 1.0000