Supplementary data for "Large-scale prediction of protein-protein interactions from structures"
Martial Hue, Michael Riffle, Jean-Philippe Vert and William Stafford Noble
BMC Bioinformatics. 11:144, 2010.
Electronic version of the article
Each file contains a list of tab-delimited pairs of PDB IDs and their labels, +1 for interacting pairs, -1 for non-interacting pairs.
The matrices are in tab-delimited format. The first row and the first column contain the PDB IDs of the proteins. The MAMMOTH kernel matrix is computed from the MAMMOTH similarity matrix.