Jointly embedding multiple single-cell omics measurements: Supplementary data

Jie Liu, Yuanhao Huang, Ritambhara Singh, Jean-Philippe Vert, William Stafford Noble

Source code for the MMD-MA algorithm is available here.

Following are tables, in tab-delimited text and numpy formats, containing all data necessary to reproduce the experiments reported in the paper. All of the data may be downloaded together in this file.

  Simulation 1 Simulation 2 Simulation 3 methyl-expr
Domain 1 input vectors 300 x 2 txt npy 300 x 2 txt npy 300 x 3 txt npy  
Domain 1 mapping 2 x 1000 txt npy 2 x 1000 txt npy 3 x 1000 txt npy  
Domain 1 mapped vectors 300 x 1000 txt npy 300 x 1000 txt npy 300 x 1000 txt npy 61 x 2486 txt npy
Domain 1 kernel 300 x 300 txt npy 300 x 300 txt npy 300 x 300 txt npy 61 x 61 txt npy
Domain 2 input vectors 300 x 2 txt npy 300 x 2 txt npy 300 x 3 txt npy  
Domain 2 mapping 2 x 2000 txt npy 2 x 2000 txt npy 3 x 2000 txt npy  
Domain 2 mapped vectors 300 x 2000 txt npy 300 x 2000 txt npy 300 x 2000 txt npy 61 x 2486 txt npy
Domain 2 kernel 300 x 300 txt npy 300 x 300 txt npy 300 x 300 txt npy 61 x 61 txt npy
Domain 1 MMD-MA output 300 x 5 txt npy 300 x 5 txt npy 300 x 5 txt npy 61 x 5 txt npy
Domain 2 MMD-MA output 300 x 5 txt npy 300 x 5 txt npy 300 x 5 txt npy 61 x 5 txt npy

Please email questions to william-noble@uw.edu and drjieliu@umich.edu.