1. CellCycleCombined.txt
Spellman et al., (1998).  Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast 
Saccharomyces cerevisiae by Microarray Hybridization.  Molecular Biology of the Cell 9, 3273-3297. 


2. environment.txt
Genomic expression programs in the response of yeast cells to environmental changes.
Mol Biol Cell 11(12):4241-57
I recommend constructing a sepatate kernel matrix for each different kind of environmental change.
heat shock from 25 degrees to 37 degrees (8 time points)
heat shock from 7 different temperatures to 37 degrees
temperature shift from 37 to 25 (5 time points)
hydrogen peroxide treatment (10 time points)
Menadione treatment (9 time points)
DTT treatment (7 time points)
diamide treatment(8 time points)
hyper-osmotic shock(7 time points)
hypo-osmotic shock (5 time points)
amino acid starvation (5 time points)
nitrogen depletion (10 time points)
stationary phase (10 time points)
steady state growth on 7 different carbon sources
overexpression of Msn2 and Msn4


3. diauxic.txt
Exploring the metabolic and genetic control of gene expression on a genomic scale.
Science. 1997 Oct 24;278(5338):680-6.
7 time points after diauxic shift
two extra datasets: Tup1 deletion, Yap1 overexpression

4.sporulation.txt
The transcriptional program of sporulation in budding yeast.
Science. 1998 Oct 23;282(5389):699-705.
time-series, 7 time points


5. Rosetta data sets.
The data sets are split into four files, I put them in a folder called Rosetta.
Functional discovery via a compendium of expression profiles.
Cell, Vol 102, 109-128.
276 deletion mutants, 11 tet-regulatable essetntial genes and 13 compounds