Compare segmentations, Sanger H3ac, HeLa, 64kb vs. Uva TR50, HeLa (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3ac, HeLa, 64kb Uva TR50, HeLa (switched states!) Number of segments State 0: 69 State 1: 57 Total size (bp) State 0: 17347931 State 1: 12509943 Avg. segment length State 0: 251419 State 1: 219473 Median segment length State 0: 175999 State 1: 127999 Min. segment length State 0: 14999 State 1: 20999 Max. segment length State 0: 1036999 State 1: 737999 Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Intersection st0 st1 total Total bp 10280418 9903097 20183515 Fraction of SangerChip 0.592602 0.791618 0.6759863 Fraction of UvaDnaRepTr50 0.8459645 0.593085 0.6996042 SangerChip minus UvaDnaRepTr50 st0 st1 total Total bp 7067513 2606846 9674359 Fraction of SangerChip 0.407398 0.2083819 0.3240137 Fraction of UvaDnaRepTr50 0.581578 0.1561210 0.3353342 UvaDnaRepTr50 minus SangerChip st0 st1 both Total bp 1871886 6794505 8666391 Fraction of SangerChip 0.1079026 0.5431284 0.2902548 Fraction of UvaDnaRepTr50 0.1540355 0.406915 0.3003958 Symmetric difference st0 st1 Total bp 8939399 9401351 Fraction of SangerChip 0.5153006 0.7515103 Fraction of UvaDnaRepTr50 0.7356135 0.563036

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.