Compare segmentations, Sanger H3K4me3, HeLa, 64kb vs. Uva TR50, HeLa (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me3, HeLa, 64kb Uva TR50, HeLa (switched states!) Number of segments State 0: 101 State 1: 82 Total size (bp) State 0: 20489899 State 1: 9367918 Avg. segment length State 0: 202870 State 1: 114243 Median segment length State 0: 122999 State 1: 99999 Min. segment length State 0: 8999 State 1: 13999 Max. segment length State 0: 1038999 State 1: 423999 Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Intersection st0 st1 total Total bp 10239983 7208197 17448180 Fraction of SangerChip 0.4997576 0.7694556 0.5843756 Fraction of UvaDnaRepTr50 0.8426372 0.4316906 0.6047916 SangerChip minus UvaDnaRepTr50 st0 st1 total Total bp 10249916 2159721 12409637 Fraction of SangerChip 0.5002424 0.2305444 0.4156244 Fraction of UvaDnaRepTr50 0.8434545 0.1293432 0.4301448 UvaDnaRepTr50 minus SangerChip st0 st1 both Total bp 1912321 9489405 11401726 Fraction of SangerChip 0.09332994 1.012968 0.3818674 Fraction of UvaDnaRepTr50 0.1573628 0.5683094 0.3952084 Symmetric difference st0 st1 Total bp 12162237 11649126 Fraction of SangerChip 0.5935723 1.243513 Fraction of UvaDnaRepTr50 1.000817 0.6976526

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.