Compare segmentations, Sanger H3K4me2, HeLa, 64kb vs. UCSD Chip H3K27me3, HeLa, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me2, HeLa, 64kb UCSD Chip H3K27me3, HeLa, 64kb (switched states!) Number of segments State 0: 95 State 1: 77 Total size (bp) State 0: 18940905 State 1: 10916923 Avg. segment length State 0: 199378 State 1: 141778 Median segment length State 0: 110999 State 1: 108999 Min. segment length State 0: 6999 State 1: 17999 Max. segment length State 0: 1031999 State 1: 629999 Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Intersection st0 st1 total Total bp 8172310 8133590 16305900 Fraction of SangerChip 0.4314635 0.7450442 0.5461181 Fraction of UcsdChip 0.7453121 0.4301793 0.5458519 SangerChip minus UcsdChip st0 st1 total Total bp 10768595 2783333 13551928 Fraction of SangerChip 0.5685365 0.2549558 0.4538819 Fraction of UcsdChip 0.9820925 0.1472083 0.4536606 UcsdChip minus SangerChip st0 st1 both Total bp 2792640 10773851 13566491 Fraction of SangerChip 0.1474396 0.9868945 0.4543697 Fraction of UcsdChip 0.2546879 0.5698207 0.4541481 Symmetric difference st0 st1 Total bp 13561235 13557184 Fraction of SangerChip 0.7159761 1.241850 Fraction of UcsdChip 1.236780 0.717029

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.