Compare segmentations, Sanger H3K4me2, HeLa, 64kb vs. MSA non-exonic 3kb sliding window, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me2, HeLa, 64kb MSA non-exonic 3kb sliding window, 64kb (switched states!) Number of segments State 0: 95 State 1: 77 Total size (bp) State 0: 18940905 State 1: 10916923 Avg. segment length State 0: 199378 State 1: 141778 Median segment length State 0: 110999 State 1: 108999 Min. segment length State 0: 6999 State 1: 17999 Max. segment length State 0: 1031999 State 1: 629999 Number of segments State 0: 57 State 1: 72 Total size (bp) State 0: 11680425 State 1: 18317635 Avg. segment length State 0: 204920 State 1: 254412 Median segment length State 0: 146000 State 1: 149000 Min. segment length State 0: 14000 State 1: 22000 Max. segment length State 0: 1000000 State 1: 1353000 Intersection st0 st1 total Total bp 9022378 8289646 17312024 Fraction of SangerChip 0.4763436 0.759339 0.5798152 Fraction of MSA 0.7724358 0.45255 0.5771048 SangerChip minus MSA st0 st1 total Total bp 9918527 2627277 12545804 Fraction of SangerChip 0.5236564 0.2406609 0.4201848 Fraction of MSA 0.849158 0.1434288 0.4182205 MSA minus SangerChip st0 st1 both Total bp 2658047 10027989 12686036 Fraction of SangerChip 0.1403337 0.9185728 0.4248814 Fraction of MSA 0.2275642 0.54745 0.4228952 Symmetric difference st0 st1 Total bp 12576574 12655266 Fraction of SangerChip 0.6639901 1.159234 Fraction of MSA 1.076722 0.6908788

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.