Compare segmentations, Uva TR50, HeLa (switched states!) vs. Affy RNA, 51.2kb (zero threshold)
Histogram of active state (st1) segment lengths
Individual segmentation statistics
Uva TR50, HeLa (switched states!) Affy RNA, 51.2kb (zero threshold)
- Number of segments
- State 0: 46
- State 1: 48
- Total size (bp)
- State 0: 12152304
- State 1: 16697602
- Avg. segment length
- State 0: 264181
- State 1: 347867
- Median segment length
- State 0: 180349
- State 1: 334499
- Min. segment length
- State 0: 4499
- State 1: 6699
- Max. segment length
- State 0: 746949
- State 1: 1617849
- Number of segments
- State 0: 95
- State 1: 86
- Total size (bp)
- State 0: 17082205
- State 1: 12275464
- Avg. segment length
- State 0: 179813
- State 1: 142738
- Median segment length
- State 0: 111399
- State 1: 84099
- Min. segment length
- State 0: 10799
- State 1: 749
- Max. segment length
- State 0: 1124499
- State 1: 680149
Intersection
st0 st1 total Total bp 8959224 8641521 17600745 Fraction of UvaDnaRepTr50 0.7372449 0.5175307 0.6100798 Fraction of AffyRnaSignal 0.524477 0.703967 0.599528
UvaDnaRepTr50 minus AffyRnaSignal
st0 st1 total Total bp 3193080 8056081 11249161 Fraction of UvaDnaRepTr50 0.2627551 0.4824693 0.3899202 Fraction of AffyRnaSignal 0.1869243 0.6562751 0.3831762
AffyRnaSignal minus UvaDnaRepTr50
st0 st1 both Total bp 8122981 3633943 11756924 Fraction of UvaDnaRepTr50 0.6684314 0.2176326 0.4075204 Fraction of AffyRnaSignal 0.475523 0.2960330 0.400472
Symmetric difference
st0 st1 Total bp 11316061 11690024 Fraction of UvaDnaRepTr50 0.9311865 0.700102 Fraction of AffyRnaSignal 0.6624473 0.9523081 Enrichment of elements
Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.