hyfi-pairwise-deltag

Description: Computes all pairwise delta G values for a set of sequences using Zuker's hybrid software, and writes the result to a tab delimited matrix.

Usage: hyfi-pairwise-deltag [options]

Output: A tab delimited file containing a matrix of delta G values. Each row and column is associated with a sequence, and the entry in a particular row and column contains the delta G of the sequence associated with the row binding to the reverse complement of the sequence associated with the column. Each row and column is labelled with a sequence; the first row consists of column labels, and each row begins with a label.

All output is written to standard output.

Options:

Bugs: None reported yet.