hyfi-index
Description: Builds a k-mer index on a FASTA file.
Usage:
hyfi-index [options] <input filename> <output filename>
Input:
- <input file>: A FASTA file..
- <output file>: an index into the FASTA file.
Output: A file indexing the k-mers in the sequence. This index is used by hyfi to rapidly locate sequences in a sequence file.
Options:
- -k <number>: the length of k-mer to index; defaults to 10.
- -v <number>: verbosity level. The verbosity is controlled by <number>; 0 means no extra output, and 5 means extreme verbosity. The default is 0.
Bugs:
- The FASTA file can only contain one sequence.