read-tide-index
Usage:
crux read-tide-index [options] <tide database>
Description:
Reads an index generated by tide-index and outputs information about the peptides it contains.Input:
tide database
– Either a FASTA file or a directory containing a database index created by a previous run of crux tide-index.
Output:
The program writes files to the folder crux-output
by default. The name of the output folder can be set by the user using the --output-dir
option. The following files will be created:
read-tide-index.peptides.txt
– a tab-delimited file containing two columns with headers: the peptide, and a semicolon-delimited list of IDs of the proteins that peptide occurs in.read-tide-index.params.txt
– a file containing the name and value of all parameters/options for the current operation. Not all parameters in the file may have been used in the operation. The resulting file can be used with the --parameter-file option for other crux programs.read-tide-index.log.txt
– a log file containing a copy of all messages that were printed to the screen during execution.
Options:
-
This command does not support any optional parameters.