METHOD MEAN 7.3.5.2 2.56.1.2 3.1.8.1 3.1.8.3 1.27.1.1 1.27.1.2 3.42.1.1 1.45.1.2 1.4.1.1 2.9.1.2 1.4.1.2 2.9.1.3 1.4.1.3 2.44.1.2 2.9.1.4 3.42.1.5 3.2.1.2 3.42.1.8 3.2.1.3 3.2.1.4 3.2.1.5 3.2.1.6 2.28.1.1 3.3.1.2 3.2.1.7 2.28.1.3 3.3.1.5 7.3.10.1 3.32.1.11 3.32.1.13 7.3.6.1 7.3.6.2 7.3.6.4 2.38.4.1 2.1.1.1 2.1.1.2 3.32.1.1 2.38.4.3 2.1.1.3 2.1.1.4 2.38.4.5 2.1.1.5 7.39.1.2 2.52.1.2 7.39.1.3 1.36.1.2 3.32.1.8 1.36.1.5 7.41.5.1 7.41.5.2 1.41.1.2 2.5.1.1 2.5.1.3 1.41.1.5 spectrum_kernel 0.8748 0.9895 0.7790 0.9796 0.9756 0.9099 0.9445 0.7596 0.9670 0.8708 0.8360 0.8498 0.9860 0.8657 0.9928 0.9253 0.4965 0.8500 0.7390 0.7637 0.9150 0.9389 0.8824 0.9533 0.6179 0.9815 0.6511 0.7258 0.9858 0.9697 0.8658 0.9968 0.9866 0.9952 0.8142 0.9452 0.9790 0.9440 0.7080 0.9681 0.9255 0.8007 0.8370 0.9526 0.7099 0.9628 0.8147 0.9333 0.8119 0.8318 0.9454 0.9844 0.7634 0.6764 0.9861 spectrum_kernel+homologs[blast] 0.8962 0.9895 0.8047 0.9938 0.9775 0.9246 0.9394 0.8686 0.9670 0.8605 0.9075 0.8276 0.9919 0.8543 0.9961 0.9673 0.5907 0.8907 0.6708 0.7862 0.9544 0.9714 0.8833 0.9747 0.6599 0.9922 0.7461 0.8441 0.9858 0.9744 0.8949 0.9990 0.9879 0.9946 0.9046 0.9755 0.9888 0.9746 0.7230 0.9720 0.9244 0.7816 0.8200 0.9451 0.6611 0.9645 0.7690 0.9377 0.7947 0.8318 0.9626 0.9996 0.9273 0.8648 0.9995 spectrum_kernel+homologs[psiblast] 0.9083 0.9895 0.8576 0.9978 0.9799 0.9246 0.9303 0.8934 0.8955 0.8605 0.9075 0.8403 0.9919 0.9669 1.0000 0.9786 0.6133 0.9523 0.6981 0.7879 0.9590 0.9891 0.8963 0.9769 0.7829 0.9922 0.7447 0.9116 0.9858 0.9872 0.9025 0.9992 0.9879 0.9946 0.9108 0.9925 0.9974 0.9606 0.7312 0.9701 0.9486 0.8202 0.8174 0.9451 0.6611 0.9825 0.7690 0.9460 0.7947 0.8318 0.9499 0.9996 0.9587 0.8851 0.9998 spectrum_kernel+profile[blast] 0.9218 0.9938 0.9989 1.0000 0.9922 0.9418 0.9435 1.0000 0.7955 0.9920 0.9196 0.8074 0.9881 0.9656 1.0000 0.9866 0.8225 0.8800 0.7891 0.7886 0.9583 1.0000 0.4963 0.9985 0.8495 0.9874 0.7340 0.8729 0.9886 0.9802 0.9906 1.0000 1.0000 1.0000 0.9878 0.9844 0.9898 0.8331 0.7854 0.9870 0.9580 0.8425 0.6578 0.9905 0.7615 0.9985 0.9368 0.9853 0.8234 0.9774 0.9835 1.0000 0.9193 0.9158 1.0000 spectrum_kernel+profile[psiblast] 0.9226 0.9940 0.9983 1.0000 0.9970 0.8652 0.9457 1.0000 0.7125 0.9912 0.9353 0.8021 0.9860 1.0000 1.0000 0.9901 0.8457 1.0000 0.7668 0.7436 1.0000 0.9989 0.8093 0.9975 0.9957 0.9981 0.7660 0.9232 0.9889 0.9965 0.9584 1.0000 1.0000 1.0000 0.9927 0.9479 0.9509 0.8844 0.8690 0.5410 0.9494 0.8624 0.5316 0.9932 0.7448 0.9976 0.8026 0.9967 0.7952 0.9771 0.9888 1.0000 1.0000 0.9884 1.0000 spectrum_kernel+testset_homologs[psiblast] 0.9247 0.9895 0.8047 0.9867 0.9789 0.9246 0.9394 0.9842 0.9670 0.8605 0.9075 0.8403 1.0000 0.9953 1.0000 0.9848 0.5856 0.9843 0.6632 0.8219 1.0000 0.9970 0.9981 0.9779 0.9986 0.9942 0.7688 0.9415 0.9858 0.9872 0.9911 1.0000 0.9875 0.9952 0.9108 0.9843 0.9973 0.9825 0.6918 0.9870 0.9777 0.7813 0.8164 0.9451 0.7050 0.9645 0.9179 0.9544 0.7947 0.8318 0.9499 1.0000 0.9633 0.9349 1.0000 spectrum_kernel+rndwlk2+homologs[psiblast] 0.9094 0.9916 0.8823 0.9926 0.9626 0.9522 0.9592 0.9110 0.9443 0.8959 0.9228 0.8597 0.9915 0.9413 1.0000 0.9781 0.6242 0.9549 0.6670 0.8063 0.9257 0.9702 0.8750 0.9751 0.9609 0.9844 0.7660 0.9050 0.9860 0.9557 0.9306 0.9987 0.9892 0.9970 0.9230 0.9654 0.9860 0.9149 0.7579 0.8984 0.8497 0.8579 0.7679 0.9546 0.7151 0.9820 0.7650 0.8677 0.7733 0.8645 0.9652 0.9952 0.9628 0.8863 1.0000 spectrum_kernel+rndwlk3+homologs[psiblast] 0.8576 0.9727 0.8115 0.9679 0.9072 0.9411 0.9312 0.9122 0.9375 0.8264 0.6118 0.8831 0.9711 0.7072 0.9999 0.9397 0.6068 0.9583 0.6016 0.7924 0.8671 0.9099 0.8546 0.9757 0.9696 0.9504 0.6894 0.8384 0.9513 0.9161 0.9083 0.9927 0.9503 0.9473 0.8704 0.8943 0.8700 0.8718 0.7539 0.5267 0.5823 0.8460 0.5346 0.8840 0.6866 0.9440 0.8213 0.6730 0.9804 0.8349 0.9289 0.9812 0.9389 0.8891 1.0000 spectrum_kernel+trans-profile[psiblast] 0.9167 0.9956 1.0000 1.0000 0.9964 0.8464 0.9426 0.9768 0.8659 0.9554 0.9283 0.9243 0.9907 1.0000 1.0000 0.9860 0.6697 0.9984 0.7847 0.7460 0.9939 1.0000 0.9472 0.9975 0.0680 0.9971 0.9787 0.3256 0.9913 0.9872 0.9602 1.0000 0.9963 0.9988 0.9853 0.9969 0.9958 0.9825 0.8802 0.9251 0.9244 0.9103 0.5836 0.9905 0.8670 0.9984 0.9356 0.9975 0.7265 0.9848 0.9918 1.0000 0.9984 0.9760 1.0000 bag-kmeans[spec_psiblast_k=100]+testset_homologs[psiblast] 0.9428 0.9839 0.9859 0.9990 0.9797 0.9452 0.8921 0.9968 0.8386 0.9967 0.8721 0.8840 0.9962 1.0000 1.0000 0.9874 0.7835 0.9991 0.5853 0.8773 1.0000 1.0000 1.0000 0.9848 1.0000 0.9844 0.7695 0.9791 0.9967 0.9825 0.9959 1.0000 0.9982 0.9934 0.9389 0.9661 0.9999 0.9786 0.7348 1.0000 0.9763 0.8525 0.6372 0.9857 0.7625 0.9963 0.9455 0.9951 0.9292 0.9674 0.9974 1.0000 0.9862 0.9758 1.0000 bag-kmeans[spec_psiblast_k=400]+testset_homologs[psiblast] 0.9348 0.9794 0.8883 0.9963 0.9633 0.8357 0.9227 0.9979 0.7455 0.9919 0.8805 0.9416 0.9962 1.0000 1.0000 0.9902 0.8247 0.9931 0.6441 0.8896 1.0000 1.0000 1.0000 0.9802 1.0000 0.9601 0.8199 0.9593 0.9959 0.8788 0.9761 1.0000 0.9854 0.9988 0.8252 0.9851 0.9995 0.9857 0.6529 0.9974 0.9846 0.7825 0.8070 0.9807 0.7764 0.9909 0.9106 0.9985 0.8331 0.9634 0.9985 1.0000 0.9819 0.9876 1.0000 blast_kernel 0.7883 0.9735 0.5646 0.9571 0.9568 0.7114 0.6434 0.7835 0.6943 0.7747 0.6999 0.7383 0.7571 0.8279 0.8128 0.6668 0.5400 0.5834 0.7362 0.8098 0.9257 0.7343 0.9139 0.6427 0.1737 0.6965 0.3943 0.5576 0.9195 0.8450 0.6251 0.9971 0.9651 0.9713 0.8631 0.9071 0.9490 0.8617 0.7151 0.9531 0.9814 0.7699 0.7000 0.8771 0.3777 0.9502 0.7464 0.8555 0.8072 0.8533 0.9955 1.0000 0.8878 0.9241 0.9993 blast_kernel+homologs[blast] 0.8257 0.9735 0.6134 0.9658 0.9801 0.7816 0.7133 0.9947 0.6943 0.8176 0.7296 0.7588 0.9580 0.8205 0.9596 0.8692 0.5227 0.5879 0.6431 0.8216 0.9380 0.6581 0.9463 0.6558 0.3054 0.8842 0.5270 0.6713 0.9195 0.9557 0.8085 1.0000 0.9644 0.9796 0.8435 0.9703 0.9764 0.8757 0.7194 0.9316 0.9785 0.7721 0.7125 0.8573 0.3914 0.9527 0.7316 0.8919 0.7769 0.8533 0.9978 1.0000 0.9794 0.9536 1.0000 trans-svm[blast,on-trn+unlab]+homologs[blast] 0.8737 0.9752 0.8252 0.9904 0.9678 0.6554 0.6743 0.9833 0.7682 0.9178 0.6617 0.7564 0.9529 0.8232 1.0000 0.9679 0.5429 0.8658 0.6981 0.7911 0.8977 0.9408 0.8463 0.9186 0.5239 0.9261 0.7823 0.9033 0.9694 0.9207 0.9338 0.9864 0.9610 0.9892 0.9499 0.9850 0.9736 0.9270 0.7639 0.9525 0.9762 0.7682 0.7217 0.9277 0.4564 0.9862 0.6793 0.9904 0.9007 0.9611 0.9955 1.0000 0.9866 0.9622 1.0000 psiblast_kernel 0.8656 0.9626 0.9236 0.9854 0.9646 0.7130 0.7292 0.9099 0.4875 0.8102 0.6647 0.7889 0.8000 0.9629 1.0000 0.9668 0.6151 0.8993 0.7286 0.9567 0.9743 0.8760 0.7843 0.8533 0.9696 0.7529 0.7170 0.9377 0.9493 0.7832 0.7405 1.0000 0.9655 0.9892 0.8350 0.9350 0.9949 0.9850 0.6524 0.9336 0.9858 0.8323 0.6338 0.7603 0.6726 0.9923 0.7981 0.9661 0.7511 0.9011 0.9951 1.0000 0.9825 0.9759 1.0000 psiblast_kernel+homologs[psiblast] 0.8811 0.9626 0.8682 0.9995 0.9782 0.7120 0.6623 1.0000 0.4670 0.8164 0.7551 0.8140 0.8544 0.9993 1.0000 0.9899 0.6110 0.9924 0.7379 0.9394 0.9648 0.9548 0.7778 0.8826 0.9971 0.7568 0.8489 0.9563 0.9493 0.8660 0.8743 1.0000 0.9661 0.9934 0.8337 0.9365 0.9991 0.9980 0.6148 0.9707 0.9959 0.8584 0.5654 0.7586 0.6734 0.9920 0.7918 0.9936 0.7646 0.9011 0.9951 1.0000 0.9981 0.9890 1.0000 psiblast_kernel+testset_homologs[psiblast] 0.8733 0.9086 0.7471 0.9798 0.9635 0.7717 0.7386 0.9984 0.6261 0.7908 0.6357 0.7391 0.8166 1.0000 1.0000 0.9770 0.6559 0.9952 0.5373 0.9719 0.9992 0.9943 0.9963 0.8217 1.0000 0.8366 0.6482 0.9810 0.8966 0.9883 0.9570 1.0000 0.9214 0.9922 0.7298 0.9759 0.9910 0.9970 0.5317 0.9779 0.9837 0.4972 0.6362 0.6950 0.8160 0.9914 0.8415 0.9957 0.6930 0.9451 0.9948 1.0000 0.9931 0.9858 1.0000 psiblast_kernel+rndwlk2+homologs[psiblast] 0.9153 0.9726 0.9900 1.0000 0.9894 0.7727 0.6946 1.0000 0.5284 0.9848 0.7440 0.9226 0.9826 1.0000 1.0000 0.9930 0.9947 0.9982 0.8125 0.8527 0.9985 0.9970 0.8185 0.9908 0.9928 0.8881 0.7504 0.9805 0.9994 0.9988 0.9253 1.0000 0.9924 1.0000 0.6039 0.9683 0.9997 0.9946 0.6179 0.9883 0.9978 0.8437 0.6820 0.7636 0.7477 0.9993 0.8454 1.0000 0.8258 0.9992 0.9993 1.0000 0.9983 0.9869 1.0000 psiblast_kernel+rndwlk3+homologs[psiblast] 0.8807 0.9932 0.9910 1.0000 0.9882 0.8013 0.7514 0.9998 0.2727 0.2055 0.7937 0.9144 0.9524 1.0000 0.9997 0.9888 0.8501 0.9980 0.8409 0.9297 0.9962 0.9989 0.7870 0.9936 0.9146 0.9689 0.6688 0.9564 0.9998 0.9965 0.9588 1.0000 0.9982 1.0000 0.7286 0.9587 0.9992 0.9830 0.6396 0.9727 0.9949 0.7191 0.6444 0.4417 0.7782 0.9993 0.8718 1.0000 0.3867 0.9991 0.9996 1.0000 0.9968 0.9378 1.0000 psiblast_kernel+spectral[k=100]+testset_homologs[psiblast] 0.8579 0.7058 0.8773 0.9970 0.9634 0.7217 0.6396 0.9986 0.3125 0.6024 0.7713 0.7856 0.9503 0.9980 1.0000 0.9427 0.7876 0.9952 0.7411 0.9435 0.9426 0.9665 0.8074 0.9334 0.6006 0.9621 0.8220 0.9462 0.9984 0.9953 0.8908 1.0000 0.9740 1.0000 0.7017 0.9590 0.9997 0.9970 0.7167 0.9694 0.9379 0.6184 0.4895 0.4842 0.6307 0.9971 0.5981 0.9970 0.7769 1.0000 0.9993 0.9996 0.9817 0.8985 1.0000 psiblast_kernel+spectral[k=200]+testset_homologs[psiblast] 0.8613 0.8304 0.9686 1.0000 0.9724 0.6370 0.6611 1.0000 0.4636 0.6815 0.5960 0.6918 0.9597 0.9993 1.0000 0.9864 0.9468 0.9972 0.7079 0.8760 0.9797 0.9985 0.9046 0.8177 0.7410 0.9290 0.7603 0.9527 0.9972 0.9988 0.8380 1.0000 0.9523 1.0000 0.7372 0.9662 0.9973 0.9985 0.5798 0.8229 0.9672 0.6048 0.5028 0.5567 0.6378 0.9978 0.7244 0.9733 0.7252 1.0000 0.9989 1.0000 0.9964 0.8753 1.0000