Supplement to "Combining classifiers for improved classification of proteins
from sequence or structure"
Iain Melvin, Jason Weston, Christina Leslie and William Stafford
Noble
-
List of
proteins
and
labels
-
Tab-delimited matrices for all pairs of proteins:
List of families in
Atrn
Atst
Btrn
Btst
Protein indices in
Atrn
Atst
Btrn
Btst
Tab-delimited
matrix
of SVM Profile Kernel class predictions and column
labels
Tab-delimited
matrix
of PSI-BLAST class predictions and column
labels
Tab-delimited
matrix
of SVM MAMMOTH class predictions and column
labels
Tab-delimited
matrix
of MAMMOTH class predictions and column
labels
Source code:
sabertooth.py
load.py
(Requires Python and NumPy)
Please contact Iain Melvin (iainmelvin@gmail.com) with questions.