Supplementary data for "Learning Sparse Models for a Dynamic Bayesian Network Classifier of Protein Secondary Structure"

Zafer Aydin, Ajit Singh, Jeffrey Bilmes and William Stafford Noble

Submitted for publication.

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Each of the links below points to a gzipped tar file containing the specified files.

• The CB513, PDB-PC20, and SD576 benchmark data sets, each containing
• The protein sequences and the corresponding secondary structure labels in FASTA format.
• The PSI-BLAST PSSMs.
• Various python and shell scripts used in running the experiments with the real data as well as the synthetic data. See the accompanying README file for documentation.
• The GMTK Linux binary and documentation.

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