Kernels for gene regulatory regions: supplementary data

Jean-Philippe Vert, Robert Thurman and William Stafford Noble

Advances in Neural Information Processing Systems 18. Accepted.

---

• Labels for eight gene groups, defined based upon similar mRNA expression profiles.
• Phylogenetic tree relating the five yeast species.
• Promoter region alignments from 3336 yeast genes.
• Feature vectors corresponding to each kernel. Each matrix is a gzipped, tab-delimited text file containing a 3336 by 1024 matrix of features, with systematic ORF IDs in the first row and column. See the paper for a full description of each kernel.
• single
• concatentation
• marginalized
• shadow 2
• shadow 5
• Markov 2 90/90
• Markov 2 90/99
• Markov 2 99/99
• Markov 5 90/90
• Markov 5 90/99
• Markov 5 99/99