Compare segmentations, Uva TR50, HeLa (switched states!) vs. Affy(thresh)/H3ac/H3K27me3/MSA non-exonic/Tr50 (wavelet)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Uva TR50, HeLa (switched states!) Affy(thresh)/H3ac/H3K27me3/MSA non-exonic/Tr50 (wavelet) Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Number of segments State 0: 61 State 1: 53 Total size (bp) State 0: 16334939 State 1: 12922947 Avg. segment length State 0: 267786 State 1: 243829 Median segment length State 0: 175999 State 1: 140999 Min. segment length State 0: 16999 State 1: 3999 Max. segment length State 0: 1116999 State 1: 1099999 Intersection st0 st1 total Total bp 10678536 11228590 21907126 Fraction of UvaDnaRep 0.8787252 0.6724672 0.7593483 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.6537237 0.8688877 0.7487597 UvaDnaRep minus Affy.H3ac.H3K27me3.MSA.Tr50 st0 st1 total Total bp 1473768 5469012 6942780 Fraction of UvaDnaRep 0.1212748 0.3275328 0.2406517 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.09022182 0.4232016 0.237296 Affy.H3ac.H3K27me3.MSA.Tr50 minus UvaDnaRep st0 st1 both Total bp 5656403 1694357 7350760 Fraction of UvaDnaRep 0.4654593 0.1014731 0.2547932 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.3462763 0.1311123 0.2512403 Symmetric difference st0 st1 Total bp 7130171 7163369 Fraction of UvaDnaRep 0.5867341 0.4290059 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.4364982 0.5543139

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.