Compare segmentations, UCSD Chip H3K27me3, 64kb, HeLa (switched states!) vs. Affy (thresh), H3ac, H3K27me3 (wavelet), Tr50

Histogram of active state (st1) segment lengths

Individual segmentation statistics UCSD Chip H3K27me3, 64kb, HeLa (switched states!) Affy (thresh), H3ac, H3K27me3 (wavelet), Tr50 Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Number of segments State 0: 62 State 1: 53 Total size (bp) State 0: 16320938 State 1: 12936947 Avg. segment length State 0: 263241 State 1: 244093 Median segment length State 0: 188999 State 1: 130999 Min. segment length State 0: 16999 State 1: 27999 Max. segment length State 0: 1117999 State 1: 1094999 Intersection st0 st1 total Total bp 7875009 10339811 18214820 Fraction of UcsdChip 0.7181984 0.5468646 0.6097543 Fraction of Affy.H3ac.H3K27me3.Tr50 0.4825096 0.7992466 0.6225611 UcsdChip minus Affy.H3ac.H3K27me3.Tr50 st0 st1 total Total bp 3089941 8567630 11657571 Fraction of UcsdChip 0.2818016 0.4531354 0.3902457 Fraction of Affy.H3ac.H3K27me3.Tr50 0.1893237 0.6622606 0.398442 Affy.H3ac.H3K27me3.Tr50 minus UcsdChip st0 st1 both Total bp 8445929 2597136 11043065 Fraction of UcsdChip 0.770266 0.1373605 0.3696746 Fraction of Affy.H3ac.H3K27me3.Tr50 0.5174904 0.2007534 0.3774389 Symmetric difference st0 st1 Total bp 11535870 11164766 Fraction of UcsdChip 1.052068 0.5904959 Fraction of Affy.H3ac.H3K27me3.Tr50 0.7068142 0.863014

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.