Compare segmentations, UCSD Chip H3K27me3, 64kb, HeLa (switched states!) vs. Affy(thresh)/H3ac/H3K27me3/MSA non-exonic/Tr50 (wavelet)

Histogram of active state (st1) segment lengths

Individual segmentation statistics UCSD Chip H3K27me3, 64kb, HeLa (switched states!) Affy(thresh)/H3ac/H3K27me3/MSA non-exonic/Tr50 (wavelet) Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Number of segments State 0: 61 State 1: 53 Total size (bp) State 0: 16334939 State 1: 12922947 Avg. segment length State 0: 267786 State 1: 243829 Median segment length State 0: 175999 State 1: 140999 Min. segment length State 0: 16999 State 1: 3999 Max. segment length State 0: 1116999 State 1: 1099999 Intersection st0 st1 total Total bp 7861009 10311807 18172816 Fraction of UcsdChip 0.7169216 0.5453835 0.6083482 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.481239 0.7979455 0.6211254 UcsdChip minus Affy.H3ac.H3K27me3.MSA.Tr50 st0 st1 total Total bp 3103941 8595634 11699575 Fraction of UcsdChip 0.2830784 0.4546165 0.3916518 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.1900185 0.665145 0.3998777 Affy.H3ac.H3K27me3.MSA.Tr50 minus UcsdChip st0 st1 both Total bp 8473930 2611140 11085070 Fraction of UcsdChip 0.7728198 0.1381012 0.3710808 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.518761 0.2020545 0.3788746 Symmetric difference st0 st1 Total bp 11577871 11206774 Fraction of UcsdChip 1.055898 0.5927177 Fraction of Affy.H3ac.H3K27me3.MSA.Tr50 0.7087796 0.8671996

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.