Compare segmentations, Sanger H4ac, HeLa, 64kb vs. Uva TR50, HeLa (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H4ac, HeLa, 64kb Uva TR50, HeLa (switched states!) Number of segments State 0: 61 State 1: 55 Total size (bp) State 0: 16279939 State 1: 13577945 Avg. segment length State 0: 266884 State 1: 246872 Median segment length State 0: 183999 State 1: 183999 Min. segment length State 0: 22999 State 1: 999 Max. segment length State 0: 998999 State 1: 899999 Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Intersection st0 st1 total Total bp 10477777 11165895 21643672 Fraction of SangerChip 0.6436005 0.8223553 0.7248897 Fraction of UvaDnaRepTr50 0.862205 0.6687125 0.7502164 SangerChip minus UvaDnaRepTr50 st0 st1 total Total bp 5802162 2412050 8214212 Fraction of SangerChip 0.3563995 0.1776447 0.2751103 Fraction of UvaDnaRepTr50 0.4774537 0.1444549 0.2847223 UvaDnaRepTr50 minus SangerChip st0 st1 both Total bp 1674527 5531707 7206234 Fraction of SangerChip 0.1028583 0.4074038 0.2413511 Fraction of UvaDnaRepTr50 0.1377950 0.3312875 0.2497836 Symmetric difference st0 st1 Total bp 7476689 7943757 Fraction of SangerChip 0.4592578 0.5850485 Fraction of UvaDnaRepTr50 0.6152487 0.4757424

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.