Compare segmentations, Sanger H3K4me2, HeLa, 64kb vs. Uva TR50, HeLa (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me2, HeLa, 64kb Uva TR50, HeLa (switched states!) Number of segments State 0: 95 State 1: 77 Total size (bp) State 0: 18940905 State 1: 10916923 Avg. segment length State 0: 199378 State 1: 141778 Median segment length State 0: 110999 State 1: 108999 Min. segment length State 0: 6999 State 1: 17999 Max. segment length State 0: 1031999 State 1: 629999 Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Intersection st0 st1 total Total bp 10771252 9109479 19880731 Fraction of SangerChip 0.5686767 0.8344365 0.6658465 Fraction of UvaDnaRepTr50 0.8863547 0.5455561 0.689109 SangerChip minus UvaDnaRepTr50 st0 st1 total Total bp 8169653 1807444 9977097 Fraction of SangerChip 0.4313233 0.1655635 0.3341535 Fraction of UvaDnaRepTr50 0.672272 0.1082457 0.3458277 UvaDnaRepTr50 minus SangerChip st0 st1 both Total bp 1381052 7588123 8969175 Fraction of SangerChip 0.07291373 0.6950789 0.3003961 Fraction of UvaDnaRepTr50 0.1136453 0.4544439 0.3108910 Symmetric difference st0 st1 Total bp 9550705 9395567 Fraction of SangerChip 0.504237 0.8606424 Fraction of UvaDnaRepTr50 0.7859172 0.5626896

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.