Compare segmentations, Sanger H3K4me1, HeLa, 64kb vs. Uva TR50, HeLa (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me1, HeLa, 64kb Uva TR50, HeLa (switched states!) Number of segments State 0: 88 State 1: 75 Total size (bp) State 0: 17014912 State 1: 12842925 Avg. segment length State 0: 193351 State 1: 171239 Median segment length State 0: 118499 State 1: 125999 Min. segment length State 0: 16999 State 1: 18999 Max. segment length State 0: 998999 State 1: 575999 Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Intersection st0 st1 total Total bp 10562326 10687104 21249430 Fraction of SangerChip 0.6207688 0.8321394 0.7116869 Fraction of UvaDnaRepTr50 0.8691624 0.6400383 0.7365511 SangerChip minus UvaDnaRepTr50 st0 st1 total Total bp 6452586 2155821 8608407 Fraction of SangerChip 0.3792312 0.1678606 0.2883131 Fraction of UvaDnaRepTr50 0.5309763 0.1291096 0.2983860 UvaDnaRepTr50 minus SangerChip st0 st1 both Total bp 1589978 6010498 7600476 Fraction of SangerChip 0.09344615 0.4680007 0.2545555 Fraction of UvaDnaRepTr50 0.1308376 0.3599617 0.2634489 Symmetric difference st0 st1 Total bp 8042564 8166319 Fraction of SangerChip 0.4726774 0.6358613 Fraction of UvaDnaRepTr50 0.6618139 0.4890714

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.