Compare segmentations, Sanger H3ac, HeLa, 64kb vs. UCSD Chip H3K27me3, HeLa, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3ac, HeLa, 64kb UCSD Chip H3K27me3, HeLa, 64kb (switched states!) Number of segments State 0: 69 State 1: 57 Total size (bp) State 0: 17347931 State 1: 12509943 Avg. segment length State 0: 251419 State 1: 219473 Median segment length State 0: 175999 State 1: 127999 Min. segment length State 0: 14999 State 1: 20999 Max. segment length State 0: 1036999 State 1: 737999 Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Intersection st0 st1 total Total bp 7982893 9530726 17513619 Fraction of SangerChip 0.460164 0.761852 0.5865662 Fraction of UcsdChip 0.7280373 0.5040728 0.5862811 SangerChip minus UcsdChip st0 st1 total Total bp 9365038 2979217 12344255 Fraction of SangerChip 0.539836 0.2381479 0.4134338 Fraction of UcsdChip 0.8540885 0.1575685 0.4132329 UcsdChip minus SangerChip st0 st1 both Total bp 2982057 9376715 12358772 Fraction of SangerChip 0.171897 0.749541 0.41392 Fraction of UcsdChip 0.2719627 0.4959272 0.4137189 Symmetric difference st0 st1 Total bp 12347095 12355932 Fraction of SangerChip 0.711733 0.987689 Fraction of UcsdChip 1.126051 0.6534957

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.