Compare segmentations, Sanger H3K4me3, HeLa, 64kb vs. UCSD Chip H3K27me3, HeLa, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me3, HeLa, 64kb UCSD Chip H3K27me3, HeLa, 64kb (switched states!) Number of segments State 0: 101 State 1: 82 Total size (bp) State 0: 20489899 State 1: 9367918 Avg. segment length State 0: 202870 State 1: 114243 Median segment length State 0: 122999 State 1: 99999 Min. segment length State 0: 8999 State 1: 13999 Max. segment length State 0: 1038999 State 1: 423999 Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Intersection st0 st1 total Total bp 8601763 7014406 15616169 Fraction of SangerChip 0.4198050 0.748769 0.5230178 Fraction of UcsdChip 0.7844781 0.3709865 0.5227626 SangerChip minus UcsdChip st0 st1 total Total bp 11888136 2353512 14241648 Fraction of SangerChip 0.580195 0.2512311 0.4769822 Fraction of UcsdChip 1.084194 0.1244754 0.4767495 UcsdChip minus SangerChip st0 st1 both Total bp 2363187 11893035 14256222 Fraction of SangerChip 0.1153342 1.269549 0.4774703 Fraction of UcsdChip 0.2155219 0.6290135 0.4772374 Symmetric difference st0 st1 Total bp 14251323 14246547 Fraction of SangerChip 0.6955292 1.520780 Fraction of UcsdChip 1.299716 0.7534889

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.