Compare segmentations, Sanger H3K4me1, HeLa, 64kb vs. UCSD Chip H3K27me3, HeLa, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me1, HeLa, 64kb UCSD Chip H3K27me3, HeLa, 64kb (switched states!) Number of segments State 0: 88 State 1: 75 Total size (bp) State 0: 17014912 State 1: 12842925 Avg. segment length State 0: 193351 State 1: 171239 Median segment length State 0: 118499 State 1: 125999 Min. segment length State 0: 16999 State 1: 18999 Max. segment length State 0: 998999 State 1: 575999 Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Intersection st0 st1 total Total bp 8245638 10133102 18378740 Fraction of SangerChip 0.4846124 0.7890027 0.6155416 Fraction of UcsdChip 0.7519996 0.535932 0.6152417 SangerChip minus UcsdChip st0 st1 total Total bp 8769274 2709823 11479097 Fraction of SangerChip 0.5153876 0.2109973 0.3844584 Fraction of UcsdChip 0.799755 0.1433205 0.3842711 UcsdChip minus SangerChip st0 st1 both Total bp 2719312 8774339 11493651 Fraction of SangerChip 0.1598193 0.6832041 0.3849459 Fraction of UcsdChip 0.2480004 0.464068 0.3847583 Symmetric difference st0 st1 Total bp 11488586 11484162 Fraction of SangerChip 0.6752069 0.8942014 Fraction of UcsdChip 1.047755 0.6073885

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.