Compare segmentations, Sanger H3ac, HeLa, 64kb vs. MSA non-exonic 3kb sliding window, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3ac, HeLa, 64kb MSA non-exonic 3kb sliding window, 64kb (switched states!) Number of segments State 0: 69 State 1: 57 Total size (bp) State 0: 17347931 State 1: 12509943 Avg. segment length State 0: 251419 State 1: 219473 Median segment length State 0: 175999 State 1: 127999 Min. segment length State 0: 14999 State 1: 20999 Max. segment length State 0: 1036999 State 1: 737999 Number of segments State 0: 57 State 1: 72 Total size (bp) State 0: 11680425 State 1: 18317635 Avg. segment length State 0: 204920 State 1: 254412 Median segment length State 0: 146000 State 1: 149000 Min. segment length State 0: 14000 State 1: 22000 Max. segment length State 0: 1000000 State 1: 1353000 Intersection st0 st1 total Total bp 8971009 9831289 18802298 Fraction of SangerChip 0.5171227 0.785878 0.6297266 Fraction of MSA 0.7680379 0.5367117 0.6267838 SangerChip minus MSA st0 st1 total Total bp 8376922 2678654 11055576 Fraction of SangerChip 0.4828773 0.214122 0.3702734 Fraction of MSA 0.7171761 0.1462336 0.368543 MSA minus SangerChip st0 st1 both Total bp 2709416 8486346 11195762 Fraction of SangerChip 0.1561809 0.6783681 0.3749685 Fraction of MSA 0.2319621 0.4632883 0.3732162 Symmetric difference st0 st1 Total bp 11086338 11165000 Fraction of SangerChip 0.6390582 0.89249 Fraction of MSA 0.9491382 0.6095219

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.