Compare segmentations, Sanger H3K4me1, HeLa, 64kb vs. MSA non-exonic 3kb sliding window, 64kb (switched states!)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me1, HeLa, 64kb MSA non-exonic 3kb sliding window, 64kb (switched states!) Number of segments State 0: 88 State 1: 75 Total size (bp) State 0: 17014912 State 1: 12842925 Avg. segment length State 0: 193351 State 1: 171239 Median segment length State 0: 118499 State 1: 125999 Min. segment length State 0: 16999 State 1: 18999 Max. segment length State 0: 998999 State 1: 575999 Number of segments State 0: 57 State 1: 72 Total size (bp) State 0: 11680425 State 1: 18317635 Avg. segment length State 0: 204920 State 1: 254412 Median segment length State 0: 146000 State 1: 149000 Min. segment length State 0: 14000 State 1: 22000 Max. segment length State 0: 1000000 State 1: 1353000 Intersection st0 st1 total Total bp 7706515 8899934 16606449 Fraction of SangerChip 0.4529271 0.6929834 0.5561839 Fraction of MSA 0.6597804 0.485867 0.5535841 SangerChip minus MSA st0 st1 total Total bp 9308397 3942991 13251388 Fraction of SangerChip 0.5470729 0.3070166 0.4438161 Fraction of MSA 0.7969228 0.2152566 0.4417415 MSA minus SangerChip st0 st1 both Total bp 3973910 9417701 13391611 Fraction of SangerChip 0.2335545 0.7332988 0.4485124 Fraction of MSA 0.3402196 0.514133 0.4464159 Symmetric difference st0 st1 Total bp 13282307 13360692 Fraction of SangerChip 0.7806274 1.040315 Fraction of MSA 1.137142 0.7293896

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.