Compare segmentations, Sanger H3K4me3, HeLa, 64kb vs. AffyRnaSignal, 51.2kb (thresholded)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me3, HeLa, 64kb AffyRnaSignal, 51.2kb (thresholded) Number of segments State 0: 101 State 1: 82 Total size (bp) State 0: 20489899 State 1: 9367918 Avg. segment length State 0: 202870 State 1: 114243 Median segment length State 0: 122999 State 1: 99999 Min. segment length State 0: 8999 State 1: 13999 Max. segment length State 0: 1038999 State 1: 423999 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 14001158 6050981 20052139 Fraction of SangerChip 0.68332 0.6459259 0.6715876 Fraction of AffyRnaSignal 0.8196341 0.492933 0.683029 SangerChip minus AffyRnaSignal st0 st1 total Total bp 6488741 3316937 9805678 Fraction of SangerChip 0.31668 0.3540741 0.3284124 Fraction of AffyRnaSignal 0.3798538 0.2702087 0.3340074 AffyRnaSignal minus SangerChip st0 st1 both Total bp 3081047 6224483 9305530 Fraction of SangerChip 0.1503691 0.6644468 0.3116614 Fraction of AffyRnaSignal 0.1803659 0.507067 0.316971 Symmetric difference st0 st1 Total bp 9569788 9541420 Fraction of SangerChip 0.4670491 1.018521 Fraction of AffyRnaSignal 0.5602197 0.7772757

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.