Compare segmentations, Sanger H3K4me1, HeLa, 64kb vs. AffyRnaSignal, 51.2kb (thresholded)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Sanger H3K4me1, HeLa, 64kb AffyRnaSignal, 51.2kb (thresholded) Number of segments State 0: 88 State 1: 75 Total size (bp) State 0: 17014912 State 1: 12842925 Avg. segment length State 0: 193351 State 1: 171239 Median segment length State 0: 118499 State 1: 125999 Min. segment length State 0: 16999 State 1: 18999 Max. segment length State 0: 998999 State 1: 575999 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 12006062 7523858 19529920 Fraction of SangerChip 0.70562 0.5858368 0.654097 Fraction of AffyRnaSignal 0.7028403 0.6129184 0.6652408 SangerChip minus AffyRnaSignal st0 st1 total Total bp 5008850 5319067 10327917 Fraction of SangerChip 0.29438 0.4141632 0.3459031 Fraction of AffyRnaSignal 0.2932203 0.4333088 0.3517962 AffyRnaSignal minus SangerChip st0 st1 both Total bp 5076143 4751606 9827749 Fraction of SangerChip 0.2983350 0.3699785 0.3291514 Fraction of AffyRnaSignal 0.2971597 0.3870816 0.3347592 Symmetric difference st0 st1 Total bp 10084993 10070673 Fraction of SangerChip 0.592715 0.7841417 Fraction of AffyRnaSignal 0.59038 0.8203904

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.