Compare segmentations, Affy RNA, HeLa vs. Affy RNA, GM06990

Histogram of active state (st1) segment lengths

Individual segmentation statistics Affy RNA, HeLa Affy RNA, GM06990 Number of segments State 0: 104 State 1: 90 Total size (bp) State 0: 19236546 State 1: 10121110 Avg. segment length State 0: 184967 State 1: 112457 Median segment length State 0: 96124 State 1: 82274 Min. segment length State 0: 1399 State 1: 4249 Max. segment length State 0: 881399 State 1: 670599 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 15321850 8360770 23682620 Fraction of GM 0.796497 0.8260724 0.8066932 Fraction of HeLa 0.896948 0.681096 0.8066928 GM minus HeLa st0 st1 total Total bp 3914696 1760340 5675036 Fraction of GM 0.2035031 0.1739276 0.1933068 Fraction of HeLa 0.2291681 0.1434031 0.1933068 HeLa minus GM st0 st1 both Total bp 1760355 3914694 5675049 Fraction of GM 0.09151097 0.3867850 0.1933073 Fraction of HeLa 0.1030520 0.3189040 0.1933072 Symmetric difference st0 st1 Total bp 5675051 5675034 Fraction of GM 0.2950140 0.5607126 Fraction of HeLa 0.3322201 0.4623071

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.