Compare segmentations, Uva TR50, HeLa (switched states!) vs. Affy RNA, 51.2kb (zero threshold)

Histogram of active state (st1) segment lengths

Individual segmentation statistics Uva TR50, HeLa (switched states!) Affy RNA, 51.2kb (zero threshold) Number of segments State 0: 46 State 1: 48 Total size (bp) State 0: 12152304 State 1: 16697602 Avg. segment length State 0: 264181 State 1: 347867 Median segment length State 0: 180349 State 1: 334499 Min. segment length State 0: 4499 State 1: 6699 Max. segment length State 0: 746949 State 1: 1617849 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 8959224 8641521 17600745 Fraction of UvaDnaRepTr50 0.7372449 0.5175307 0.6100798 Fraction of AffyRnaSignal 0.524477 0.703967 0.599528 UvaDnaRepTr50 minus AffyRnaSignal st0 st1 total Total bp 3193080 8056081 11249161 Fraction of UvaDnaRepTr50 0.2627551 0.4824693 0.3899202 Fraction of AffyRnaSignal 0.1869243 0.6562751 0.3831762 AffyRnaSignal minus UvaDnaRepTr50 st0 st1 both Total bp 8122981 3633943 11756924 Fraction of UvaDnaRepTr50 0.6684314 0.2176326 0.4075204 Fraction of AffyRnaSignal 0.475523 0.2960330 0.400472 Symmetric difference st0 st1 Total bp 11316061 11690024 Fraction of UvaDnaRepTr50 0.9311865 0.700102 Fraction of AffyRnaSignal 0.6624473 0.9523081

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.