Compare segmentations, UCSD Chip H3K27me3, HeLa, 64kb (switched states!) vs. Affy RNA, 51.2kb (zero threshold)

Histogram of active state (st1) segment lengths

Individual segmentation statistics UCSD Chip H3K27me3, HeLa, 64kb (switched states!) Affy RNA, 51.2kb (zero threshold) Number of segments State 0: 50 State 1: 59 Total size (bp) State 0: 10964950 State 1: 18907441 Avg. segment length State 0: 219299 State 1: 320465 Median segment length State 0: 152249 State 1: 305499 Min. segment length State 0: 16999 State 1: 16999 Max. segment length State 0: 661999 State 1: 1610499 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 6426869 8073161 14500030 Fraction of UcsdChip 0.5861284 0.4269833 0.485399 Fraction of AffyRnaSignal 0.3762318 0.6576665 0.4939094 UcsdChip minus AffyRnaSignal st0 st1 total Total bp 4538081 10834280 15372361 Fraction of UcsdChip 0.4138716 0.5730167 0.514601 Fraction of AffyRnaSignal 0.2656613 0.8825964 0.5236234 AffyRnaSignal minus UcsdChip st0 st1 both Total bp 10655336 4202303 14857639 Fraction of UcsdChip 0.9717633 0.2222566 0.4973703 Fraction of AffyRnaSignal 0.6237682 0.3423335 0.5060906 Symmetric difference st0 st1 Total bp 15193417 15036583 Fraction of UcsdChip 1.385635 0.7952733 Fraction of AffyRnaSignal 0.8894295 1.22493

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.