Compare segmentations, MSA non-exonic, 64kb (states switched!) vs. Affy RNA, 51.2kb (zero threshold)

Histogram of active state (st1) segment lengths

Individual segmentation statistics MSA non-exonic, 64kb (states switched!) Affy RNA, 51.2kb (zero threshold) Number of segments State 0: 57 State 1: 72 Total size (bp) State 0: 11680425 State 1: 18317635 Avg. segment length State 0: 204920 State 1: 254412 Median segment length State 0: 146000 State 1: 149000 Min. segment length State 0: 14000 State 1: 22000 Max. segment length State 0: 1000000 State 1: 1353000 Number of segments State 0: 95 State 1: 86 Total size (bp) State 0: 17082205 State 1: 12275464 Avg. segment length State 0: 179813 State 1: 142738 Median segment length State 0: 111399 State 1: 84099 Min. segment length State 0: 10799 State 1: 749 Max. segment length State 0: 1124499 State 1: 680149 Intersection st0 st1 total Total bp 8031214 8648237 16679451 Fraction of MSA 0.6875789 0.4721263 0.5560177 Fraction of AffyRnaSignal 0.4701509 0.704514 0.5681463 MSA minus AffyRnaSignal st0 st1 total Total bp 3649211 9669398 13318609 Fraction of MSA 0.3124211 0.5278737 0.4439823 Fraction of AffyRnaSignal 0.2136265 0.7877012 0.4536671 AffyRnaSignal minus MSA st0 st1 both Total bp 9050991 3627227 12678218 Fraction of MSA 0.7748854 0.1980183 0.4226346 Fraction of AffyRnaSignal 0.5298491 0.2954859 0.4318537 Symmetric difference st0 st1 Total bp 12700202 13296625 Fraction of MSA 1.087306 0.725892 Fraction of AffyRnaSignal 0.7434756 1.083187

Enrichment of elements

Plots below indicate the relative enrichment, over the expected value, of various elements in each state, for each dataset. Enrichment values for state 0 are represented with "0"s and "1"s for state 1. Different colors are used for the different datasets.